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Synnovis

About
Corporate Profile
Synnovis is a scientific organisation with a clinical purpose. In partnership with our service partners, Guy’s and St. Thomas’ Hospitals, King’s College Hospital and Princess Royal University Hospital, we aim to set the standard for the future of pathology.
Contact
- Address
- Friars Bridge Court
- 41-43 Blackfriars Road
- London
- SE1 8NZ
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Clinical Bioinformatician
Closed for applications on: 20-May-2024 09:32
Vacancy status: Closed
Closed for applications on: 20-May-2024 09:32
Key details
Location
- Site
- St Thomas' Hospital
- Address
- Westminster Bridge Road
- Town
- London
- Postcode
- SE1 7EH
- Major / Minor Region
- London
Contract type & working pattern
- Contract
- Fixed term: 18 months
- Hours
- Full time - 37.5 hours per week
Salary
- Grade
- Synnovis Pay Band 7
Specialty
- Main area
- Infection Sciences
The place to work in pathology
We are looking for top talent to join the UK’s leading and fastest growing pathology company – a scientific organisation with a clinical purpose.
Working in partnership with our service partners, Guy’s and St. Thomas’ Hospitals, King’s College Hospital and Princess Royal University Hospital we aim to set the standard for the future of pathology.
Job overview
We are looking for a highly motivated Bioinformatician to join our Infection Sciences team which is currently based at St. Thomas’ Hospital.
The post will be part of the Transformative award team, aiming to implement clinical metagenomics for sterile and respiratory samples, bacterial isolate sequencing and viral blood borne sequencing. Additionally, the postholder will work closely to the Synnovis bioinformatics team based across the Guy’s Hospital and Kings College Hospital sites.
The successful applicant will be dedicated and enthusiastic with knowledge and experience of working with NGS pipelines and large datasets, ideally in microbial genomics, and strong programming and troubleshooting experience. Applicants should be good communicators, be able to take initiative, support continual quality improvement and prioritise workload. The role requires consistent attention to detail and excellent organisational skills.
This is an exciting opportunity to join a dynamic team which is highly valued in Synnovis Genomics. The successful candidates will support existing diagnostic services in the South East and also be involved in a very active programme of assay and technology development.
Applicants will be expected to have attained or be working towards passing HCPC registration. STP trainees in their final year of training or those wanting to attain HCPC registration are encouraged to apply.
Advert
The role involves maintaining and operating the bioinformatics pipelines for the processing of next generation sequencing data for Infection Sciences, managing multiple pipelines supporting services for the Clinical Metagenomics, isolate sequencing and viral sequencing services.
The post-holder will work with other clinical scientists to support the development, validation and implementation of new/updated diagnostic tests. This will include developing and delivering validated software for delivery of diagnostic services following clinical best practice guidelines as well as working with cloud-based infrastructure, local databases and the latest technologies to deliver bioinformatics services. As such candidates will be expected to recognise the importance of testing, validating and quality control of bioinformatic pipelines.
We support a flexible, hybrid working pattern. The role is based at the St. Thomas’ Hospital site working closely with the CIDR (Centre of Infectious Diseases Research) department and Synnovis Genomics department. The Transformative team is comprised of scientists, clinicians and bioinformaticians, and candidates should have good communication skills. Experience of the clinical healthcare environment is desirable.
Working for our organisation
Your development and learning
You will have a suite of learning opportunities available through The Synnovis Way Development programme, the Scientific Learning and Development Fund and the Synnovis Academy through which you can receive funding / support for advanced qualifications.
Through our Innovation Accelerator Fund, you can apply for finance to get that new innovative scientific project off the ground, and participate with the wider scientific community through symposiums, conferences and other peer group meetings.
Detailed job description and main responsibilities
At Synnovis, we are currently shaping the future of pathology services by creating a world-leading Hub and Spoke pathology network with our NHS partners. A large part of this modernisation will involve moving 70% of our services to a purpose built, state of the art Hub laboratory in the heart of London. For now, the job you are applying for will be based at one of our hospital sites however, from 1 April 2024 our people and services will start to move to our Hub laboratory in Blackfriars, Southwark, SE1, with some work remaining in refurbished essential services laboratories across our hospital network, focusing on the rapid turnover of urgent tests. Please do ask your recruiting manager if you wish to find out more.
The post holder will be working within a team of bioinformaticians to support Synnovis Infectious Diseases services based across Guy’s and St Thomas’ Hospital Foundation Trusts. This role will be a mix of acting as duty bioinformatician, development work and data analysis. The duty bioinformatician ensures the smooth operational delivery of the service and answers daily issues raised by the scientific teams. Development work includes working on new and updating existing pipelines, database projects, evaluations of applications or infrastructure planning. Supporting scientific and clinical teams is also an important part of the role, requiring strong data analysis and presentation skills. The post holder will be responsible for ensuring quality and validation documentation for the clinical pipelines.It is likely that the majority of the role will be supporting the development of the service, but individuals will need to cover all aspects of the role. Having a broad set of programming skills and IT knowledge will be required. They will be responsible for ensuring that all work is completed to a high standard within defined timelines. The post holder will be expected to work efficiently as part of the bioinformatics team and as a supportive team member.
The post holder will work within the multidisciplinary Transformative team, which includes research scientists, biomedical scientists, and clinicians. The post holder will communicate progress across the multidisciplinary team.
Synnovis is a pathology partnership between SYNLAB UK and Ireland, and the NHS, including sites, Guy’s & St Thomas’ NHS Foundation Trust and King’s College Hospital NHS Foundation Trust, to deliver and transform pathology services across South East London.
The partnership provides services to 1.7 million people living in South East London, as well as to hundreds of thousands of patients from outside the region who use local healthcare services.
The partnership provides diagnostics, testing and digital pathology for hospital trusts, GP services and other healthcare providers.
Guy’s and St Thomas’ Hospital Foundation Trust is a major emergency and specialist teaching Trust which has all the specialties associated with a fascinating and career defining case load including: Women’s Services, Fetal Medicine, Haematology, Oncology, Transplantation, Intensive Care Unit including the Severe Respiratory Failure and High Consequence Infectious Disease units, and is also home to the Evelina Children’s Hospital and the Cancer Centre on the Guy’s site.
You will be close to the vibrant Borough Market and the South Bank, which are exceptional London locations; perfect places to work and relax next to such iconic venues as Big Ben, The London Eye and The Shard!
Applications are welcomed from applicants with a disability. We can make reasonable adjustments and offer support and advice in a variety of ways throughout the application process. All applicants are welcome to apply regardless of age, disability, gender, marital status, race, nationality or ethnic origin, religion, or sexual orientation. Equality of opportunity is our policy.
Our Bank workers enjoy competitive market rates and flexible contract assignments across all of our sites, dependent on your availability and location.
For our Permanent workforce we offer a competitive benefits package.
All employees are entitled to:
- Contributory pension scheme
- Generous annual leave entitlement
- Ground breaking development
opportunities
Safeguarding children and vulnerable adults. All employees have a responsibility for safeguarding children and vulnerable adults in the course of their daily duties and for ensuring that they are aware of the specific duties relating to their role.
Please apply for this post on-line. If you have problems with using the online process, or need any assistance, please email [email protected]
Your e-mail address is important to us. We communicate to all job applicants via the e-mail address which has been provided on the application form. Please ensure that you check your e-mail on a regular basis.
Due to the high volumes of applications we receive, we reserve the right to close any adverts before the published closing date once we have received a sufficient number of applications.
If you decide to apply for this post but do not hear back from us within three weeks of the closing date, please assume that you have not been short-listed on this occasion.
Thank you for your interest in Synnovis.
Applicant requirements
Person specification
Qualifications
Essential criteria
- BSc (or MSc, diploma, or higher award) in bioinformatics, biological sciences or related field
Desirable criteria
- PhD in bioinformatics, biological sciences or related field
- HCPC Registration (or working towards registration)
Experience
Essential criteria
- Experience of analysing next generation sequence data
- Experience of developing, implementing and maintaining bioinformatic data analysis pipelines for next generation sequencing
Desirable criteria
- Developing cloud-based genomics apps, e.g. on AWS and DNAnexus
- Experience in scientific workflow languages for genomic pipelines (e.g. Nextflow)
- Experience in developing pipelines for ONT data
- Experience in microbial genomics analysis
Skills & Knowledge
Essential criteria
- Ability to use scripting languages such as Python and Bash
- Ability to trouble shoot and independently solve problems
Further details / informal visits contact
- Name
- Adela Medina
- Job title
- Lead Next Generation Sequencing, infection sciences
- Email address
- [email protected]
No longer accepting applications
Sorry, this vacancy is no longer accepting applications.
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