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UK Health Security Agency

About
The UK Health Security Agency (UKHSA) will be responsible for planning, preventing and responding to external health threats, and providing intellectual, scientific and operational leadership at national and local level, as well as on the global stage. UKHSA will ensure the nation can respond quickly and at greater scale to deal with pandemics and future threats.
Contact
- Address
- 10 South Colonnade
- London
- E14 4PU
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Pathogen Genomics Senior Scientist
Accepting applications until: 22-Jul-2025 23:59
Vacancy status: Open
Accepting applications until: 22-Jul-2025 23:59
Key details
Location
- Site
- UKHSA Colindale
- Address
- 61 Colindale Ave
- Town
- London
- Postcode
- NW9 5EQ
- Major / Minor Region
- London
Contract type & working pattern
- Contract
- 12 months (Fixed term contract - 12 months from start date)
- Hours
- Full time
- Part time
- Job share
- Flexible working
Salary
- Salary
- £58,589 - £68,344 Per annum, pro rata
- Salary period
- Yearly
- Grade
- (Civil Service: Grade 7)
Specialty
- Main area
- Genomics Science
The United Kingdom Health Security Agency (UKHSA) is a system leader for health security; taking action internationally to strengthen global health security, providing trusted advice to government and the public and reducing inequalities in the way different communities experience and are impacted by infectious disease, environmental hazards, and other threats to health.
UKHSA’s remit, as an agency with a global-to-local reach, is to protect the health of the nation from infectious diseases and other external threats to health. As the nation’s expert national health security agency UKHSA will:
- Prevent: anticipate threats to health and help build the nation’s readiness, defences and health security
- Detect: use cutting edge environmental and biological surveillance to proactively detect and monitor infectious diseases and threats to health
- Analyse: use world-class science and data analytics to assess and continually monitor threats to health, identifying how best to control and mitigate the risks
- Respond: take rapid, collaborative and effective actions nationally and locally to mitigate threats to health when they materialise
- Lead: lead strong and sustainable global, national, regional and local partnerships designed to save lives, protect the nation from public health threats and reduce inequalities.
Job overview
The pathogen genomics senior scientist will provide technical and scientific expertise, for the development and implementation of a new genomics driven nationwide wastewater monitoring and surveillance capability. The post holder will work closely with the Pathogen Genomics Scientific Lead and wider scientific teams to support the development and implementation of genomics services.
This post will work cross departmentally, between Science and The Chief Data Officer Group (CDO) with colleagues across UKHSA and wider, comprising a large diverse community of genomic scientists, microbiology specialists, bioinformaticians, data analysts, modellers, epidemiologists and other experts. This is a unique opportunity to work at the interface between cutting edge genomics and data analysis. Supporting our ambitions to create a nationwide scale wastewater monitoring and surveillance capability, working with several collaborators across UKHSA, government and academia. Working together, this exciting programme will be at the forefront of translational innovation, developing new genomic capabilities for wastewater monitoring and surveillance of human pathogens.
The post holder will work with colleagues who are based across the country at different sites and/or who work remotely.
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The post holder will need to have:
- A good understanding of genomics and molecular biology for the study of infectious diseases and ideally some bioinformatics experience, specifically within Genomics.
- Excellent genomics knowhow and hands on experience in the diversity of genome sequencing approaches.
- Great communication skills will be needed to train others, engage with users, and share knowhow.
- A strong understanding of the relevant technologies, applications and limitations or strengths of, for pathogen genomics will be important.
This exciting programme will be at the forefront of development of new genomic capabilities for wastewater monitoring and surveillance of human pathogens. The post holder will lead on developing rapid targeted sequencing and metagenomic methodologies for pathogens from wastewater, across our suites of Illumina and ONT platforms. We are seeking a dynamic, applied research genomics scientist, who has R&D and implementation expertise, someone who is proactive, keen to translate genomic R&D to new services for wastewater. A key aim will be the acceleration of development to implementation of new automated genomic capabilities for the analyses of wastewater, aligned with our genomics strategy and stakeholder needs across our national network of laboratories. This includes the development and evaluation of new genomic methods, optimise current workflows, supporting service development and horizon scanning.
Working for our organisation
We pride ourselves as being an employer of choice, where Everyone Matters promoting equality of opportunity to actively encourage applications from everyone, including groups currently underrepresented in our workforce. UKHSA ethos is to be an inclusive organisation for all our staff and stakeholders. To create, nurture and sustain an inclusive culture, where differences drive innovative solutions to meet the needs of our workforce and wider communities. We do this through celebrating and protecting differences by removing barriers and promoting equity and equality of opportunity for all. Please visit our careers site for more information https://gov.uk/ukhsa/careers
Detailed job description and main responsibilities
This is a collaborative, hands on role, supporting the modernisation of genomic technologies and workflows for wastewater. The post holder will:
- Bridge research, development, and innovation with practicable implemented solutions pathogen genomic applications
- Create and demonstrating a new nationwide in scale pathogen genomic wastewater capability.
- Develop genomic workflows, ensuring they are cheap, fast, more accurate and more accessible.
- Support development and optimisation of laboratory Pathogen Genomics waste water services, providing high quality analyses that meet clinical and scientific requirements and comply with best practice, and are safe, economical, and effective.
- Provide technical and scientific expertise, for the development of new and optimised molecular and genomic workflows for the monitoring and surveillance of pathogens from wastewater.
- Work with the Pathogen Genomics Scientific Lead as an enabler of a nationwide scale wastewater capability.
- Work with colleagues across the team, UKHSA wide and with external organisations to accelerate R&D, and support implementation of new wastewater capabilities, which can automated, for a diversity of human pathogens.
- Focus on the development of a new pathogen genomic wastewater monitoring and surveillance capability.
- Support the Pathogen Genomics Scientific team, developing genomic workflows, for a variety of different pathogens.
- Provide expert public health genomics advice and support, underpinned by data driven decision making.
- Analyse and interprete genomics run data, QC and outputs from common bioinformatic tools, to support interpretation and analyses of new methods and troubleshooting.
- Leverage innovative solutions, great communication skills, and public health genomics expertise.
- Be an enabler of knowledge exchange, working with expert and non-expert stakeholders, to bridge R&D with implementation.
- Support the delivery of our genomics strategy so therefore must be a highly motivated, solutions focused team player who is able to work across a diversity of teams and expertise.
The duties/responsibilities listed above describe the post as it is at present and is not intended to be exhaustive. The Job holder is expected to accept reasonable alterations and additional tasks of a similar level that may be necessary.
Essential Criteria:
- PhD or equivalent additional training, with degree across biological sciences
- Significant postgraduate practical and theoretical experience of genomics
- Experience in working with clinical samples or diagnostic testing
- Extensive experience, working knowledge and competency of genomics and/or bioinformatics
- Experience of working in multidisciplinary teams e.g. across wet lab, bioinformatics, quality etc
- Experience providing technical advice, scientific problem solving, R&D and applied sciences
- Experience with automation, liquid handling, development and operation
- Strong data analysis skills and experience. As well as the presentation/communicating complex data to a wide range of stakeholders both technical and non-technical
- Understands the application of genomics for public health across virology and bacteriology
- Experience of critically assessing current ways of working and introducing efficient and cost-effective practices
- Good organisation skills with ability to multi-task and particular attention to detail
- Communication skills - able to convey instructions, ideas and opinions clearly and concisely, both orally and in writing
- Training and teaching skills - aptitude for developing staff skills and capabilities
- Able to deputise as needed for the scientific lead, working with others and leading on task deliverables
- Willingness to travel, some activities are likely to require visiting other national laboratories
Selection process details
This vacancy is using Success Profiles and will assess your Behaviours, Strengths, Ability, Experience and Technical skills.
You will be required to complete an application form. You will be assessed on the listed 15 essential criteria, and this will be in the form of a:
- Application form (‘Employer/ Activity history’ section on the application)
-
Up to 1250-word supporting statement
This should outline how you consider your skills, experience, and knowledge, provide evidence of your suitability for the role, with reference to the essential criteria.
The Application form and Statement of Suitability will be marked together.
Longlisting: In the event of a large number of applications we will longlist into 3 piles of:
- Meets all essential criteria
-
Meets some essential criteria
-
Meets no essential criteria
Meets all and Meets Some essential criteria will be moved through to the shortlisting stage.
Shortlisting: In the event of a large number of applications we will shortlist on:
- Significant postgraduate practical and theoretical experience of genomics Experience in working with clinical samples or diagnostic testing
Please do not exceed 1250 words. We will not consider any words over and above this number. If you are successful at this stage, you will progress to an interview. Unfortunately, late applications will not be considered.
Please note you will not be able to upload your CV. You must complete the application form in as much detail as possible. Please do not email us your CV.
Feedback will not be provided at this stage.
Stage 2: Interview (success profiles)
You will be invited to a (single) remote interview.
Behaviours, technical, experience, ability and strengths will be tested at interview
The Behaviour's tested during the interview stage will be:
- Developing Self and Others (lead)
- Communicating and Influencing
- Working Together
- Working at Pace
Once this job has closed, the job advert will no longer be available. You may want to save a copy for your records.
Location
This role is being offered as office based at our Scientific Campus in Colindale.
If based at one of our scientific campuses, you will be required to have a Counter Terrorism Check security vetting check as a minimum. For meaningful National Security Vetting checks to be carried out individuals need to have lived in the UK for a sufficient period of time. You should normally have been resident in the United Kingdom for the last 3 years as the role requires Counter Terrorism Check (CTC) clearance. In exceptional circumstances UK residency less than the outlined periods may not necessarily bar you from gaining national security vetting and applicants should contact the Vacancy Holder/Recruiting Manager listed in the advert for further advice.
Eligibility Criteria
Open to all external applicants (anyone) from outside the Civil Service (including by definition internal applicants).
Security Clearance Level Requirement
Successful candidates must pass a disclosure and barring security check.
IMPORTANT - PLEASE READ
Artificial Intelligence (AI)
Artificial Intelligence can be a useful tool to support your application, however, all examples and statements provided must be truthful, factually accurate and taken directly from your own experience. Where plagiarism has been identified (presenting the ideas and experiences of others, or generated by artificial intelligence, as your own) applications may be withdrawn and internal candidates may be subject to disciplinary action. Please see our candidate guidance for more information on appropriate and inappropriate use.
Link below:
Artificial intelligence and recruitment | Civil Service Careers
This is a Non-Reserved post under the Civil Service Nationality Rules. To be eligible for employment in the UK Civil Service applicants must meet the Civil Service Nationality Rules (CSNRs) which operate independently of and additionally to the Immigration Rules. Applicants must also meet necessary security and vetting requirements, along with any other relevant pre-employment checks.
This job is broadly open to the following groups:
- UK nationals
- nationals of the Republic of Ireland
- nationals of Commonwealth countries who have the right to work in the UK
- nationals of the EU, Switzerland, Norway, Iceland or Liechtenstein and family members of those nationalities with settled or pre-settled status under the European Union Settlement Scheme (EUSS) (opens in a new window)
- nationals of the EU, Switzerland, Norway, Iceland or Liechtenstein and family members of those nationalities who have made a valid application for settled or pre-settled status under the European Union Settlement Scheme (EUSS)
- individuals with limited leave to remain or indefinite leave to remain who were eligible to apply for EUSS on or before 31 December 2020
- Turkish nationals, and certain family members of Turkish nationals, who have accrued the right to work in the Civil Service
For more information on job nationality requirements and the right to work in the UK, see the Civil Service Nationality rules (opens in a new window) and the UK Visas and Immigration rules (opens in a new window)
For posts on UKHSA Civil Service terms and conditions, new entrants to the Civil Service are expected to start on the minimum of the pay band. For existing Civil Servants and roles advertised across government, the rules of transfer apply, i.e., level transfers move on current salary or the pay range minimum, transfers on promotion move to new pay range minimum or receive a 10% increase. Either case is determined by whichever is the highest.
The Civil Service pay structure and progression is different from NHS Agenda for Change (AfC), most local authority pay grades and other systems that have annual pay increments. For further details, please refer to the Information Sheet- Starting Salaries & Benefits attachment.
For AfC or Medical/Dental posts, you must have the correct professional registration to be appointed. The pay will follow the AfC or Medical & Dental terms & conditions. You may be asked to provide evidence of previous service whilst we are conducting pre-employment checks to determine your starting salary.
For Temporary Appointments, if you are not currently a civil servant, you will take up the post on a Fixed Term appointment. You may be able to take this role up as a Secondment. If you are an existing Civil Servant, based outside of the UKHSA, you will take up the post as a loan which you will need your department to agree. You cannot take the post up as a fixed term. If you are an existing UKHSA member of staff, you will take up the post as either a level transfer or a temporary promotion as per the UKHSA’s Pay policy.
Given the nature of the work of the UKHSA, as a Category 1 responder under the Civil Contingencies Act, you may be required in an emergency, if deemed a necessity, to redeploy to another role at short notice. You may also be required to work at any other location, within reasonable travelling distance of your permanent home address, in line with the provisions set out in your contract of employment.
Late Applications will unfortunately not be considered.
Working for the Civil Service
We recruit by merit on the basis of fair and open competition, as outlined in the Civil Service Commission's recruitment principles (opens in a new window).
The Civil Service embraces diversity and promotes equality of opportunity. The law requires that selection for appointment to the Civil Service is on merit on the basis of fair and open competition, as outlined in the Civil Service Commission's Recruitment Principles.
If you feel your application has not been treated in accordance with the Recruitment Principles, and you wish to make a complaint, in the first instance, you should contact UKHSA Public Accountability Unit via email: [email protected] If you are not satisfied with the response you receive from the Department, you can contact the Civil Service Commission: Visit the Civil Service Commission website here.
Reserve List - If more than the required number of suitable candidates pass the interview criteria, you may be kept on a reserve list for 12 months subject to your agreement. You may be contacted, in merit-order, if similar roles with closely matching essential criteria become available and the department choose to appoint from a reserve list.
The panel will assess if candidates meet the requirement of the role first, using a specific benchmark system. If you are interviewed for the post and do not meet the required threshold for the specified grade, your application may be assessed against a similar, lower grade role and you may be offered the post should one be available.
Interview expenses will not be reimbursed.
UKHSA is required to check employment and/or education history covering three consecutive years. Please ensure you give details of at least two different referees, even if you were employed in one company for three years or more.
If you are offered a job, information will also be transferred into the national NHS Electronic Staff Records system. Please note, all communication regarding your application will be made via email, please ensure you check your junk/spam folders as emails are sometimes filtered there.
Any move to UKHSA from another employer will mean you can no longer access childcare vouchers. This includes moves between government departments. You may however be eligible for other government schemes, including Tax-Free Childcare. Determine your eligibility at https://www.childcarechoices.gov.uk/.
Benefits of working at UKHSA include:
- Generous annual leave:
-26 days for the first 5 years of continuous service
-28 days after 5 years of continuous service
-32 days after 10 years of continuous service
-Plus public holidays and one privilege day for the King’s birthday - Access to a generous Defined Benefit pension scheme with employer contributions.
- Access to a cycle-to-work salary sacrifice scheme, season ticket advances and payroll giving.
- Access to a retail discounts and cashback site.
- We also promote flexible working patterns (part-time, job-share, condensed hours). UKHSA views flexible working as essential in enabling us to recruit and retain talented people, ensuring that they are able to enjoy a long-lasting career with us. All employees have the right to apply for flexible working and there are a range of options available including working from home, compressed hours and job sharing.
- We also offer a generous maternity/ paternity and adoption leave package.
Hybrid Working
UKHSA operates a hybrid working model where business needs allow. This provides us with greater flexibility about how and where we work, to get the best from our workforce.
As a hybrid worker, you will usually spend a minimum of 60% of your contracted hours (averaged over a month) working at one of UKHSA's locations (approximately 3 days a week pro rata) and the rest of your time working from home.
Disability Confident Scheme
The Civil Service embraces diversity and promotes equal opportunities. As such, we run a Disability Confident Scheme for candidates with disabilities who meet the minimum selection criteria at sift to ensure these candidates are invited to interview. If you wish to be included in this scheme please tick the box on your application form.
Reasonable Adjustments
The Civil Service is committed to making sure that our selection methods are fair to everyone.
To help you during the recruitment process, we will take into account any reasonable adjustments that could help you.
An adjustment is a change to the recruitment process or an adjustment at work.
This is separate to the Disability Confident Scheme.
If you need an adjustment to be made at any point during the recruitment process you should:
Contact the recruitment team in confidence as soon as possible to discuss your needs.
You can find out more information about reasonable adjustments across the Civil Service here: https://www.civil-service-careers.gov.uk/reasonable-adjustments/
International Police Check
If you have spent more than 6 months abroad over the last 3 years you may need an International Police Check. This would not necessarily have to be in a single block, and could be time accrued over that period.
Internal Fraud check
If successful for this role as one aspect of pre-employment screening, applicant’s personal details – name, national insurance number and date of birth - will be checked against the Cabinet Office Internal Fraud Hub and anyone included on the database will be refused employment unless they can show exceptional circumstances. Currently this is only for External candidates to the Civil Service.
Security Vetting
Please check the Security Clearance needed for the role and follow the link for more information:
https://www.gov.uk/government/publications/united-kingdom-security-vetting-clearance-levels/national-security-vetting-clearance-levels
Person specification
Application form and Supporting Statement
Essential criteria
- Application form and Supporting Statement
Behaviours
Essential criteria
- Developing self and others
- Leadership
- Communicating and Influencing
- Working together
Documents
- Job Description (PDF, 138.8KB)
- Civil Service Recruitment Principles (PDF, 2.6MB)
- Civil Service Nationality Rules (PDF, 195.3KB)
- Application Form Guidance Notes (PDF, 77.3KB)
- Information Sheet - Starting salaries and benefits (PDF, 129.4KB)
- Information Sheet - Selection Process (PDF, 110.1KB)
- Working at UKHSA and your benefits (PDF, 219.2KB)
Further details / informal visits contact
- Name
- Harry Mccullagh
- Job title
- Resourcing Officer
- Email address
- [email protected]
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